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Irradiation-driven molecular dynamics: a review

The Journal of Physical Chemistry B - September 2, 2021

Magnetic sensitivity of cryptochrome 4 from a migratory songbird

Introducing VIKING: A Novel Online Platform for Multiscale Modeling. V.Korol et al. ACS Omega, 5, 2, 1254-1260 (2020)

Prechondrogenic {ATDC5} cell attachment and differentiation on graphene foam; modulation by surface functionalization with fibronectin, S.M. Frahs et al, ACS Applied Materials and Interfaces 11, pp.41906-41924 (2019)

Et radikalt kompas viser fugelene vej. E. Sjulstok, C. Nielsen, I.A. Solov'yov. Aktuel Naturvidenskab 5, pp 30-33, (2018)

Atomistic Insights into Cryptochrome Interprotein Interactions. Sarafina M. Kimø, Ida Friis, Ilia A. Solov’yov, Biophysical Journal 115, 616-628, 2018

Electron transfer from ascorbic acid to a photo-activated state of cryptochrome could enhance the ability of the protein to respond to the Earth's magnetic field and so result in a more efficient magnetic compass sensor in night-migratory songbirds.

Charge Transfer at the Qo‑Site of the Cytochrome bc1 Complex Leads to Superoxide Production. Adrian Bøgh Salo, Peter Husen, Ilia A. Solov’yov. J. Phys. Chem. B, 121: 1771−1782, 2017.

Mechanism of the Primary Charge Transfer Reaction in the Cytochrome bc1 Complex. Angela M. Barragan, Klaus Schulten, Ilia A. Solov'yov. J. Phys. Chem. B, 120: 11369−11380, 2016.

Studying chemical reactions in biological systems with MBN Explorer: implementation of molecular mechanics with dynamical topology. Image credit: Ilia A. Solov’yov, Andrey V. Solov’yov. Eur. Phys. J. D, 70: 1-12, 2016.

Spontaneous Binding of Molecular Oxygen at the Qo-Site of the bc1 Complex Could Stimulate Superoxide Formation. Image credit: P. Husen, I.A. Solov'yov. URL: <a href='http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849'>http://pubs.acs.org/doi/abs/10.1021/jacs.6b04849</a>.

Electron spin relaxation in cryptochrome-based magnetoreception. Image credit: Ilia A. Solov'yov, P. J. Hore, Daniel R. Kattnig. URL: <a href='http://dx.doi.org/10.1039/C5CP06731F'>http://dx.doi.org/10.1039/C5CP06731F</a>.

Publications

Year

Title

Author(s)

Abstract contains

Journal(s)

2024

0, (2024)

Spurious negative eigenvalues of numerical variance-covariance matrices in many-body systems correlate with the existence of frozen degrees of freedom, Jonathan Hungerland, Ilia A. Solov'yov, Fabian Schuhmann, Physica Scripta, 99, 085249-(1-8), (2024)

A Computer Laboratory for the Calculation of the Heat Capacity of a Peptide Unfolding Transition, Lau Blom Grøndahl, Fabian Schuhmann, Dennis Bruhn, Vikas Dubey, Ilia A. Solov'yov, Himanshu Khandelia, The Biophysicist, 5, 67-80, (2024)

Different receptor models show differences in ligand binding strength and location: a computational drug screening for the tick-borne encephalitis virus, Felicitas Finke, Jonathan Hungerland, Ilia A. Solov'yov, Fabian Schuhmann, Molecular Diversity, https://doi.org/10.1007/s11030-024-10850-8, (2024)

External RF-EMF alters cell number and ROS balance possibly via the regulation of NADPH metabolism and apoptosis, Sheung-Ching Chow, Yang Zhang, Raymond W. M. Ng, Shu-Yuen Ron Hui, Ilia A. Solov'yov, Wing-Yee Lui, Frontiers in Public Health, 12, 1425023-(1-11), (2024)

MBN Explorer and MBN Studio Tutorials: Version 5.0, Alexey Verkhovtsev, Ilia A. Solov'yov, Andrei V. Korol, Gennady B. Sushko, Andrey V. Solov'yov, Frankfurt am Main, Germany, MesoBioNano Science Publishing, (2024)

Condensed Matter Systems Exposed to Radiation: Multiscale Theory, Simulations, and Experiment, Andrey V. Solov'yov, Alexey V. Verkhovtsev, Nigel J. Mason, Richard A. Amos, Ilko Bald, Gérard Baldacchino, Brendan Dromey,Martin Falk, Juraj Fedor, Luca Gerhards, Michael Hausmann, Georg Hildenbrand, Miloš Hrabovsk\'y, Stanislav Kadlec, Jaroslav Kočišek, Franck Lépine, Siyi Ming, Andrew Nisbet, Kate Ricketts, Leo Sala, Thomas Schlathölter, Andrew E. H. Wheatley, Ilia A. Solov'yov, Chemical Reviews, 124, 8014-8129, (2024)

Importance of Polarizable Embedding for Absorption Spectrum Calculations of Arabidopsis thaliana Cryptochrome 1, Anders Frederiksen, Luca Gerhards, Peter Reinholdt, Jacob Kongsted, Ilia A. Solov'yov, Journal of Physical Chemistry B, 128, 6283-6290, (2024)

Understanding the Red Shift in the Absorption Spectrum of the FAD Cofactor in ClCry4 Protein, Katarina Kretschmer, Anders Frederiksen, Peter Reinholdt, Jacob Kongsted, Ilia A. Solov'yov, Journal of Physical Chemistry B, 128, 5320-5326, (2024)

Magnetic orientation in juvenile Atlantic herring (Clupea harengus) could involve cryptochrome 4 as a potential magnetoreceptor, Malien Laurien, Lara Mende, Lena Luhrmann, Anders Frederiksen, Mandus Aldag, Lisa Spiecker, Catriona Clemmesen, Ilia A. Solov'yov, Gabriele Gerlach, Journal of the Royal Society Interface, 21, 20240035, (2024)